Michael G. Harvey bio photo

Michael G. Harvey

Postdoctoral Fellow
Rabosky Lab
Museum of Zoology
University of Michigan
mgh272@gmail.com

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Software/Data


I try to make all my data and software freely available and easily accessible. Scripts are generally available from Github, and data from NCBI, Dryad, or elsewhere. If you notice something I’ve neglected to post, please contact me.


Software


seqcap_pop

A pipeline for de novo assembly of population-level sequence capture datasets.

mps-sim

A program for simulating large sets of alignments resembling those obtained from massively parallel sequencing approaches like RAD-Seq and sequence capture of ultraconserved elements.

misc_python

A repository of miscellaneous Python code, mostly for processing and manipulating genetic data. Many of these are scripts for formatting input files for different phylogenetic and population genetics programs. Included are scripts for:

misc_R

A repository of miscellaneous R code, mostly for analyzing and visualizing data, including scripts for:


Data